Please

1) install default cygwin from http://sources.redhat.com/cygwin/

2) run /usr/X11R6/bin/startxwin.bat to start the X server

Then, copy A.exe, xterm.exe and all the .dll files to a PATH location,
or, if you just want to try out the downloaded program in a temporary
directory, type under bash prompt,

$ PATH=$PATH:.

Then, type

$ DISPLAY=localhost:0; export DISPLAY

Then, try

$ xterm

If xterm is working, then try

$ A DNA.pdb


                                                        Ju Li.
                                             Thu Jan 24 03:39:26 2002


ps: If you see error message 'The procedure entry point __getreent
could not be located in the dynamic link library cygwin1.dll.', it
means you are using an outdated c:\cygwin\bin\cygwin1.dll emulation
kernel (assuming c:\cygwin is your cygwin root directory). Either
update your cygwin installation by going to
http://sources.redhat.com/cygwin/, or, copy the provided DLL file
'Kernel/cygwin1.dll' in the unzipped folder to c:\cygwin\bin\ (cannot
do this in cygwin terminal - must do it in Windows - and a good idea
is to save the old kernel first by renaming it cygwin1.dll.old).

                                                        Ju Li.
                                             Wed May 26 23:07:54 2004


xterm ver. 202 in cygwin is broken for using AtomEye.  To see your xterm
version, type 'xterm -v'.  The xterm.exe included in this directory is
ver. 196, which works well.
                                                       Ju Li.
                                                       Feb.  3, 2006


If the user can create a shortcut with the following command line
"C:\cygwin\bin\run.exe -p /usr/X11R6/bin xterm -display 127.0.0.1:0.0 -ls", 
then he can avoid typing the lines described in your .txt file
everytime to use Atomeye. 

                                                        one user
                                                        Feb.  3, 2006